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Linux for Biologists

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1. About this book
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2. Getting started
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- 2.1. An overview of Linux
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- 2.2. Running a Linux desktop
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  - 2.2.1. Running Linux as a virtual machine
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  - 2.2.2. The Desktop
  - 2.2.3. Changing system settings
- 2.3. Available software
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- 2.4. Files and directories
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3. Getting software
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- 3.1. The quick and easy method
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- 3.2. Python packages
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- 3.3. Perl modules
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- 3.4. R packages
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- 3.5. Conda packages
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- 3.6. Debian packages
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4. Using the command line
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- 4.1. Shell and Terminal
- 4.2. An overview of commands
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- 4.3. Other useful commands
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- 4.4. Editing text files using nano
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- 4.5. Exercise — using the command-line
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- 4.6. Notes
5. Galaxy
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- 5.1. Why use Galaxy?
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  - 5.1.1. What can you use Galaxy for?
  - 5.1.2. Why run Galaxy on your computer?
- 5.2. Running Galaxy on your computer
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- 5.3. Registering a user account
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  - 5.3.1. Managing your account
- 5.4. Granting admin privileges for user
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6. Reference management
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7. Note-taking
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8. Glossary
9. Credits

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3.6.1. Requirements#

Attention

This procedure installs software in system paths and so requires administrator privileges.

3.6.2. Installing a Debian package

3.6. Debian packages

Copyright © 2023, Vimalkumar Velayudhan

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